Bioconductor RNA Seq

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3.7k

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deseq2 mahattan plot RNA Seq

updated 4.5 years ago by bernatgel ▴ 150 • written 5.5 years ago by adeler001 • 0

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4.3k

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batch effect limma rna seq DE

updated 5.0 years ago by Steve Lianoglou ★ 13k • written 5.0 years ago by svlachavas ▴ 840

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1.2k

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RNA seq cpm

updated 5.0 years ago by Kevin Blighe ★ 4.0k • written 5.0 years ago by isabel.pieterse • 0

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1.3k

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sgseq alternative splicing rna seq

updated 8 months ago by Sara • 0 • written 5.4 years ago by 116100016 • 0

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1.2k

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edger RNA Seq

updated 5.4 years ago by James W. MacDonald 68k • written 5.4 years ago by abf ▴ 30

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704

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rna seq

5.4 years ago adeler001 • 0

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1.1k

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rna seq SGSeq Alternative splicing

updated 5.5 years ago by Leonard Goldstein ▴ 260 • written 5.5 years ago by 116100016 • 0

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724

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deseq2 likelihood ratio rna seq wald test

updated 5.6 years ago by Michael Love 43k • written 5.6 years ago by adeler001 • 0

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1.2k

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volcano plot rna seq

updated 5.6 years ago by Michael Love 43k • written 5.6 years ago by adeler001 • 0

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1.6k

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limma voom RNA Seq Time-course experiments

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by mahes.muniandy • 0

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1.4k

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RNA seq wgcna

updated 5.8 years ago by Peter Langfelder ★ 3.0k • written 5.8 years ago by agustin.gonvi ▴ 20

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2.5k

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rna seq trimmomatic trimming adapter trimming paired analysis

5.9 years ago Mozart ▴ 30

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2.0k

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heatmap.2 hierarchical clustering microarray RNA seq DEG

7.1 years ago lawarde.ankita1 ▴ 30

13 results • Page 1 of 1

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Comment: DiffBind can't find a DAR by ATpoint ★ 4.8k

"My cake does not look as advertised in the recipe", with this sloppy sentence I hope you understand that you need to give people details, …

Comment: DESeq - help with pair wise comparisons by bd2000 ▴ 30

Follow up question, is this the correct way to extract results? ```r results <- results(ddsObj, list(c("GroupControl.Followup", "GroupTrea…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ktz • 0

Thank you for your reply! I would love to know your thoughts on the plots I've included above. > 'Are the differences between groups lar…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ktz • 0

I also realised that the other gene I pointed out that was flagged as DE but had similar count differences also shows that rep1 is lower th…

Comment: DESeq - help with pair wise comparisons by bd2000 ▴ 30

Thanks that's great!! I've followed the instructions from the link you sent, is my code correct? By correct I mean, is my code comparing fo…

Votes

Comment: DESeq - help with pair wise comparisons

Answer: Is random access by row index possible for an indexed VCF file?

Answer: SingleR with multiple single cell references

Awards • All

Scholar to James W. MacDonald 68k